Hm. That's difficult because I don't really make distinctions. If I like a movie, I like it, and I don't give much thought to the medium. On top of that, my "favorite" anything tends to change constantly. ^^; That said, in no particular order:

1. V for Vendetta
2. The Incredibles
3. The Matrix
4. Pirates of the Caribbean (the trilogy as a whole)
5. Amadeus
6. Back to the Future
7. The Lion King
8. Sweeney Todd
9. Hellraiser 1-3 (Nothing after that counts)
10. The Hunchback of Notre Dame (Disney version)

Animated movies only:

1. The Incredibles
2. The Lion King
3. The Hunchback of Notre Dame (Disney version)
4. The Little Mermaid
5. Aladdin
6. Beauty and The Beast
7. The Princess and The Frog
8. Toy Story series (but still haven't seen #3, sadly)
9. Monsters Inc.
10. Shrek (The original only)